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| evolution and molecular biology: The Evolution of Molecular Biology Kensal Van Holde, Jordanka Zlatanova, 2018-02-20 The Evolution of Molecular Biology: The Search for the Secrets of Life provides the historical knowledge behind techniques founded in molecular biology, also presenting an appreciation of how, and by whom, these discoveries were made. It deals with the evolution of intellectual concepts in the context of active research in an approachable language that accommodates readers from a variety of backgrounds. Each chapter contains a prologue and epilogue to create continuity and provide a complete framework of molecular biology. This foundational work also functions as a historical and conceptual supplement to many related courses in biochemistry, biology, chemistry, genetics and history of science. In addition, the book demonstrates how the roots of discovery and advances–and an individual's own research–have grown out of the history of the field, presenting a more complete understanding and context for scientific discovery. - Expands on the development of molecular biology from the convergence of two independent disciplines, biochemistry and genetics - Discusses the value of molecular biology in a variety of applications - Includes research ethics and the societal implications of research - Emphasizes the human aspects of research and the consequences of such advances to society |
| evolution and molecular biology: Data Analysis in Molecular Biology and Evolution Xuhua Xia, 2007-05-08 Data Analysis in Molecular Biology and Evolution introduces biologists to DAMBE, a proprietary, user-friendly computer program for molecular data analysis. The unique combination of this book and software will allow biologists not only to understand the rationale behind a variety of computational tools in molecular biology and evolution, but also to gain instant access to these tools for use in their laboratories. Data Analysis in Molecular Biology and Evolution serves as an excellent resource for advanced level undergraduates or graduates as well as for professionals working in the field. |
| evolution and molecular biology: Fundamentals of Molecular Evolution Dan Graur, Wen-Hsiung Li, 2000-01 Genes, genetic codes, and mutation. Dynamics of genes in populations. Evolutionary change in nucleotide sequences. Rates and patterns of nucleotide substitution. Molecular phylogenetics. Gene duplication, exon shuffling, and concerted evolution. Evolution by transposition. Genome evolution. Spatial and temporal frameworks of the evolutionary process. Basics of probability. |
| evolution and molecular biology: The Causes of Molecular Evolution John H. Gillespie, 1994-05-26 This work provides a unified theory that addresses the important problem of the origin and maintenance of genetic variation in natural populations. With modern molecular techniques, variation is found in all species, sometimes at astonishingly high levels. Yet, despite these observations, the forces that maintain variation within and between species have been difficult subjects of study. Because they act very weakly and operate over vast time scales, scientists must rely on indirect inferences and speculative mathematical models. However, despite these obstacles, many advances have been made. The author's research in molecular genetics, evolution, and bio-mathematics has enabled him to draw on this work, and present a coherent and valuable view of the field. The book is divided into three parts. The first consists of three chapters on protein evolution, DNA evolution, and molecular mechanisms. This section reviews the experimental observations on genetic variation. The second part gives a unified treatment of the mathematical theory of selection in a fluctuating environment. The final two chapters combine the earlier assessments in a treatment of the scientific status of two competing theories for the maintenance of genetic variation. Steeped in the enormous advances population genetics has made over the past 25 years, this book has proven highly popular among human geneticists, biologists, evolutionary theorists, and bio-mathematicians. |
| evolution and molecular biology: Environmental Epigenetics L. Joseph Su, Tung-chin Chiang, 2015-05-18 This book examines the toxicological and health implications of environmental epigenetics and provides knowledge through an interdisciplinary approach. Included in this volume are chapters outlining various environmental risk factors such as phthalates and dietary components, life states such as pregnancy and ageing, hormonal and metabolic considerations and specific disease risks such as cancer cardiovascular diseases and other non-communicable diseases. Environmental Epigenetics imparts integrative knowledge of the science of epigenetics and the issues raised in environmental epidemiology. This book is intended to serve both as a reference compendium on environmental epigenetics for scientists in academia, industry and laboratories and as a textbook for graduate level environmental health courses. Environmental Epigenetics imparts integrative knowledge of the science of epigenetics and the issues raised in environmental epidemiology. This book is intended to serve both as a reference compendium on environmental epigenetics for scientists in academia, industry and laboratories and as a textbook for graduate level environmental health courses. |
| evolution and molecular biology: Bioinformatics and Molecular Evolution Paul G. Higgs, Teresa K. Attwood, 2013-04-30 In the current era of complete genome sequencing, Bioinformatics and Molecular Evolution provides an up-to-date and comprehensive introduction to bioinformatics in the context of evolutionary biology. This accessible text: provides a thorough examination of sequence analysis, biological databases, pattern recognition, and applications to genomics, microarrays, and proteomics emphasizes the theoretical and statistical methods used in bioinformatics programs in a way that is accessible to biological science students places bioinformatics in the context of evolutionary biology, including population genetics, molecular evolution, molecular phylogenetics, and their applications features end-of-chapter problems and self-tests to help students synthesize the materials and apply their understanding is accompanied by a dedicated website - www.blackwellpublishing.com/higgs - containing downloadable sequences, links to web resources, answers to self-test questions, and all artwork in downloadable format (artwork also available to instructors on CD-ROM). This important textbook will equip readers with a thorough understanding of the quantitative methods used in the analysis of molecular evolution, and will be essential reading for advanced undergraduates, graduates, and researchers in molecular biology, genetics, genomics, computational biology, and bioinformatics courses. |
| evolution and molecular biology: Molecular Evolution Roderick D.M. Page, Edward C. Holmes, 2009-07-14 The study of evolution at the molecular level has given the subject of evolutionary biology a new significance. Phylogenetic 'trees' of gene sequences are a powerful tool for recovering evolutionary relationships among species, and can be used to answer a broad range of evolutionary and ecological questions. They are also beginning to permeate the medical sciences. In this book, the authors approach the study of molecular evolution with the phylogenetic tree as a central metaphor. This will equip students and professionals with the ability to see both the evolutionary relevance of molecular data, and the significance evolutionary theory has for molecular studies. The book is accessible yet sufficiently detailed and explicit so that the student can learn the mechanics of the procedures discussed. The book is intended for senior undergraduate and graduate students taking courses in molecular evolution/phylogenetic reconstruction. It will also be a useful supplement for students taking wider courses in evolution, as well as a valuable resource for professionals. First student textbook of phylogenetic reconstruction which uses the tree as a central metaphor of evolution. Chapter summaries and annotated suggestions for further reading. Worked examples facilitate understanding of some of the more complex issues. Emphasis on clarity and accessibility. |
| evolution and molecular biology: Computational Molecular Evolution Ziheng Yang, 2006-10-05 This book describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes. |
| evolution and molecular biology: Evolutionary and Molecular Biology Robert J. Russell, William R. Stoeger, Francisco José Ayala, 1998 This collection of twenty-two research papers explores the creative interaction between evolutionary and molecular biology, philosophy, and theology. It is the result of the third of five international research conferences co-sponsored by the Vatican Observatory, Rome and the Center for Theology and the Natural Sciences, Berkeley. The over arching goal of these conferences is to support the engagement of constructive theology with the natural sciences and to investigate the philosophical and theological elements in ongoing theoretical research in the natural sciences. Contents: An extensive introduction (Robert John Russell), two recent statements on evolution and Christian faith by Pope John Paul II, and an interpretive essay by the Director of the Observatory, George V. Coyne, S. J., Section One: Scientific Background--evolutionary and molecular biology (Francisco J Ayala and Camilo J. Cela-Conde) and the possibility of the evolution of extraterrestrial life (Julian Chela-Flores); Section Two: Evolution and Divine Action-philosophical analyses of teleology in light of biology from the perspectives of a scientist (Francisco J. Ayala) and a theologian (Wesley J. Wildman), assessments of the evidence for teleology by scientists (Paul Davies and William R. Stroeger, S. J.), and theological arguments on divine action and evolution focusing on special providence (Robert John Russell) and on process theism (Charles Birch); Section Three: Religious Interpretations of Biological Themes--critique of evolution-based arguments for atheism and of science-based religion (George F. R. Ellis), Darwin's relation to natural theology and a feminist perspective on metaphors in evolution (Anne M. Clifford), evolution from a naturalist perspective and the challenge to religion (Willem B. Drees), bicultural evolution and the created co-creator (Philip Hefner), continuity and emergence, propensities, pain, and death in light of evolution, and constructive Christology from and Anglican perspective (Arthur Peacocke), original sin and saving grace in light of evolution from a trinitarian perspective (Denis Edwards), divine kenosis and the power of the future from an evolutionary and process perspective (John F. Haught), and a comparison of models of God in light of evolution (Ian G. Barbour); Section Four: Biology, Ethics, and the Problem of Evil-an evolutionary model of biological and moral altruism (Camilo J. Cela-Conde and Gisele Marty), supervenience as a response to the reduction of Morality to biology (Nancey Murphy), ethical and theological issues raised by gem-line genetic therapy (Ted Peters), and the problems of divine action and theodicy in light of human sinfulness and suffering in nature (Thomas F. Tracy). This series of conferences builds on the initial 1987 Vatican Observatory conference and its resulting publication, Physics, Philosophy and Theology: A Common Quest for Understanding (1988), and on the previous Jointly-sponsored conferences and their publications, Quantum Cosmology and the Laws of Nature (1993) and Chaos and Complexity (1995). Future conferences will focus on scientific topics including the neuroscience's, quantum physics, and quantum field theory. |
| evolution and molecular biology: Integrated Molecular Evolution Scott Orland Rogers, 2016-06-08 Evolutionary biology has increasingly relied upon tools developed in molecular biology that allow for the structure and function of macromolecules to be used as data for exploring the patterns and processes of evolutionary change. Integrated Molecular Evolution, Second Edition is a textbook intended to expansively and comprehensive review evolutionary studies now routinely using molecular data. This new edition has been thoroughly updated and expanded, and provides a basic summary of evolutionary biology as well as a review of current phylogenetics and phylogenomics. Reflecting a burgeoning pedagogical landscape, this new edition includes nearly double the number of chapters, including a new section on molecular and bioinformatic methods. Dedicated chapters were added on: Evolution of the genetic code Mendelian genetics and population genetics Natural selection Horizontal gene transfers Animal development and plant development Cancer Extraction of biological molecules Analytical methods Sequencing methods and sequencing analyses Omics Phylogenetics and phylogenetic networks Protein trafficking Human genomics More than 400 illustrations appear in this edition, doubling the number included in the first edition, and over 100 of these diagrams are now in color. The second edition combines and integrates extensive summaries of genetics and evolutionary biology in a manner that is accessible for students at either the graduate or undergraduate level. It also provides both the basic foundations of molecular evolution, such as the structure and function of DNA, RNA and proteins, as well as more advanced chapters reviewing analytical techniques for obtaining sequences, and interpreting and archiving molecular and genomic data. |
| evolution and molecular biology: The Neutral Theory of Molecular Evolution Motoo Kimura, 1985-01-10 Motoo Kimura, as founder of the neutral theory, is uniquely placed to write this book. He first proposed the theory in 1968 to explain the unexpectedly high rate of evolutionary change and very large amount of intraspecific variability at the molecular level that had been uncovered by new techniques in molecular biology. The theory - which asserts that the great majority of evolutionary changes at the molecular level are caused not by Darwinian selection but by random drift of selectively neutral mutants - has caused controversy ever since. This book is the first comprehensive treatment of this subject and the author synthesises a wealth of material - ranging from a historical perspective, through recent molecular discoveries, to sophisticated mathematical arguments - all presented in a most lucid manner. |
| evolution and molecular biology: Molecular Evolution Ziheng Yang, 2014 Studies of evolution at the molecular level have experienced phenomenal growth in the last few decades, due to rapid accumulation of genetic sequence data, improved computer hardware and software, and the development of sophisticated analytical methods. The flood of genomic data has generated an acute need for powerful statistical methods and efficient computational algorithms to enable their effective analysis and interpretation. Molecular Evolution: a statistical approach presents and explains modern statistical methods and computational algorithms for the comparative analysis of genetic sequence data in the fields of molecular evolution, molecular phylogenetics, statistical phylogeography, and comparative genomics. Written by an expert in the field, the book emphasizes conceptual understanding rather than mathematical proofs. The text is enlivened with numerous examples of real data analysis and numerical calculations to illustrate the theory, in addition to the working problems at the end of each chapter. The coverage of maximum likelihood and Bayesian methods are in particular up-to-date, comprehensive, and authoritative. This advanced textbook is aimed at graduate level students and professional researchers (both empiricists and theoreticians) in the fields of bioinformatics and computational biology, statistical genomics, evolutionary biology, molecular systematics, and population genetics. It will also be of relevance and use to a wider audience of applied statisticians, mathematicians, and computer scientists working in computational biology. |
| evolution and molecular biology: Molecular Evolutionary Genetics Masatoshi Nei, 1987 -- The Scientist |
| evolution and molecular biology: Reading the Story in DNA Lindell Bromham, 2008 The story in DNA, or, What kind of information can I get from DNA? -- The immortal germline, or, How do I get DNA samples? -- We are all mutants, or, How do I identify individuals? -- Endless copies, or, How do I amplify DNA? -- Descent with modification, or, How do I detect natural selection? -- Origin of species, or, How do I align DNA sequences? -- Tree of life, or, How do I construct a phylogeny? -- Tempo and mode, or, How do I estimate molecular dates? -- You are a scientist, or, What do I do now? |
| evolution and molecular biology: Molecular Biology of the Cell , 2002 |
| evolution and molecular biology: Molecular Markers, Natural History and Evolution J. C. Avise, 2012-12-06 Molecular approaches have opened new windows on a host of ecological and evolutionary disciplines, ranging from population genetics and behavioral ecology to conservation biology and systematics. Molecular Markers, Natural History and Evolution summarizes the multi-faceted discoveries about organisms in nature that have stemmed from analyses of genetic markers provided by polymorphic proteins and DNAs. The first part of the book introduces rationales for the use of molecular markers, provides a history of molecular phylogenetics, and describes a wide variety of laboratory methods and interpretative tools in the field. The second and major portion of the book provides a cornucopia of biological applications for molecular markers, organized along a scale from micro-evolutionary topics (such as forensics, parentage, kinship, population structure, and intra-specific phylogeny) to macro-evolutionary themes (including species relationships and the deeper phylogenetic structure in the tree of life). Unlike most prior books in molecular evolution, the focus is on organismal natural history and evolution, with the macromolecules being the means rather than the ends of scientific inquiry. Written as an intellectual stimulus for the advanced undergraduate, graduate student, or the practicing biologist desiring a wellspring of research ideas at the interface of molecular and organismal biology, this book presents material in a manner that is both technically straightforward, yet rich with concepts and with empirical examples from the world of nature. |
| evolution and molecular biology: Molecular and Genome Evolution Dan Graur, 2015-01-01 This book describes the driving forces behind the evolutionary process at the molecular and genome levels, the effects of the various molecular mechanisms on the structure of genes, proteins, and genomes, the methodology and the analytical tools involved in dealing with molecular data from an evolutionary perspective, and the logic of evolutionary hypothesis testing. Evolutionary phenomena at the molecular level are detailed in a way that can be understood without much prerequisite knowledge of molecular biology, evolution, or mathematics. Numerous examples that support and clarify the theoretical arguments and methodological discussions are included. |
| evolution and molecular biology: Molecular Evolution and Phylogenetics Masatoshi Nei, Sudhir Kumar, 2000-07-27 During the last ten years, remarkable progress has occurred in the study of molecular evolution. Among the most important factors that are responsible for this progress are the development of new statistical methods and advances in computational technology. In particular, phylogenetic analysis of DNA or protein sequences has become a powerful tool for studying molecular evolution. Along with this developing technology, the application of the new statistical and computational methods has become more complicated and there is no comprehensive volume that treats these methods in depth. Molecular Evolution and Phylogenetics fills this gap and present various statistical methods that are easily accessible to general biologists as well as biochemists, bioinformatists and graduate students. The text covers measurement of sequence divergence, construction of phylogenetic trees, statistical tests for detection of positive Darwinian selection, inference of ancestral amino acid sequences, construction of linearized trees, and analysis of allele frequency data. Emphasis is given to practical methods of data analysis, and methods can be learned by working through numerical examples using the computer program MEGA2 that is provided. |
| evolution and molecular biology: Molecular Methods for Evolutionary Genetics Virginie Orgogozo, Matthew V. Rockman, 2011-03-15 We are entering a particularly fruitful period in evolutionary genetics, as rapid technological progress transforms the investigation of genetic variation within and between species. Molecular Methods for Evolutionary Genetics is a collection of advanced molecular biology protocols and general overviews intended to represent the essential methods currently bringing evolutionary genetics to fruition. Divided into six thematic sections, this volume covers methods for characterizing genomes, diverse approaches to enrich DNA for subsets of the genome prior to sequencing, and state-of-the-art protocols for sampling genetic variation for genetic mapping studies and population genetic studies (RAD sequencing, Sequenom, microarrays, etc.). The volume concludes by focusing on methods to study candidate genes, from obtaining their sequences and analyzing their transcripts to experimentally manipulating their activities in vivo. Written in the highly successful Methods in Molecular BiologyTM series format, chapters contain introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and accessible, Molecular Methods for Evolutionary Genetics serves as a rich resource to biologists interested in evolution, whether they be specialists or beginners in molecular biology. |
| evolution and molecular biology: Molecular Biology and Evolution of Blood Group and MHC Antigens in Primates Antoine Blancher, Jan Klein, Wladyslaw W. Socha, 2012-12-06 Zoologists have categorized primates into a single order, and no one doubts today that they share a common ancestry. Humans and Old and New World non human primate species, from the lemurs of Madagascar to the African anthro poid apes, represent diverging branches of an evolutionary common trunk. Along with species-specific characters, all primates have retained a number of ancestral traits, relics of their common origin. The comparative study of these species-specific and ancestral traits makes it possible to reconstruct the evolu tionary pathways of humans and nonhuman primates. The discovery of the human blood groups and, later, of the Major Histocom patibility Complex (MHC) had a seminal effect on the field of human genetics, providing the first sound examples of mendel ian polymorphisms. The use of blood group and MHC alleles as genetic markers in biological anthropology gen erated a conceptual revolution and persuaded researchers to begin to think in terms of populations and not only intems of typology. The counterparts of these human red and white cell antigens were found and studied in nunhuman primates, and progress in this field is summarized in this book. |
| evolution and molecular biology: Darwin in the Genome Lynn Helena Caporale, 2003 Publisher Description |
| evolution and molecular biology: Directed Enzyme Evolution Frances H. Arnold, George Georgiou, 2008-02-02 Directed evolution comprises two distinct steps that are typically applied in an iterative fashion: (1) generating molecular diversity and (2) finding among the ensemble of mutant sequences those proteins that perform the desired fu- tion according to the specified criteria. In many ways, the second step is the most challenging. No matter how cleverly designed or diverse the starting library, without an effective screening strategy the ability to isolate useful clones is severely diminished. The best screens are (1) high throughput, to increase the likelihood that useful clones will be found; (2) sufficiently sen- tive (i. e. , good signal to noise) to allow the isolation of lower activity clones early in evolution; (3) sufficiently reproducible to allow one to find small improvements; (4) robust, which means that the signal afforded by active clones is not dependent on difficult-to-control environmental variables; and, most importantly, (5) sensitive to the desired function. Regarding this last point, almost anyone who has attempted a directed evolution experiment has learned firsthand the truth of the dictum “you get what you screen for. ” The protocols in Directed Enzyme Evolution describe a series of detailed p- cedures of proven utility for directed evolution purposes. The volume begins with several selection strategies for enzyme evolution and continues with assay methods that can be used to screen enzyme libraries. Genetic selections offer the advantage that functional proteins can be isolated from very large libraries s- ply by growing a population of cells under selective conditions. |
| evolution and molecular biology: Molecular Approaches To Ecology And Evolution R. deSalle, Bernd Schierwater, 1998-09-29 The last ten years have seen an explosion of activity in the application of molecular biological techniques to evolutionary and ecological studies. This volume attempts to summarize advances in the field and place into context the wide variety of methods available to ecologists and evolutionary biologists using molecular techniques. Both the molecular techniques and the variety of methods available for the analysis of such data are presented in the text. The book has three major sections - populations, species and higher taxa. Each of these sections contains chapters by leading scientists working at these levels, where clear and concise discussion of technology and implication of results are presented. The volume is intended for advanced students of ecology and evolution and would be a suitable textbook for advanced undergraduate and graduate student seminar courses. -- Publisher. |
| evolution and molecular biology: Archaea Roger A. Garrett, Hans-Peter Klenk, 2008-05-12 Introduced by Crafoord Prize winner Carl Woese, this volumecombines reviews of the major developments in archaeal researchover the past 10–15 years with more specialized articlesdealing with important recent breakthroughs. Drawing on majorthemes presented at the June 2005 meeting held in Munich to honorthe archaea pioneers Wolfram Zillig and Karl O. Stetter, the bookprovides a thorough survey of the field from its controversialbeginnings to its ongoing expansion to include aspects ofeukaryotic biology. The editors have assembled articles from the premier researchersin this rapidly burgeoning field, including an account by CarlWoese of his original discovery of the Archaea (until 1990 termedarchaebacteria) and the initially mixed reactions of the scientificcommunity. The review chapters and specialized articles address theemerging significance of the Archaea within a broader scientificand technological context, and include accounts of cutting-edgeresearch developments. The book spans archaeal evolution,physiology, and molecular and cellular biology and will be anessential reference for both graduate students and researchers. |
| evolution and molecular biology: Techniques in Molecular Systematics and Evolution Rob DeSalle, Gonzalo Giribet, Ward Wheeler, 2013-12-01 The amount of information that can be obtained by using molecular techniques in evolution, systematics and ecology has increased exponentially over the last ten years. The need for more rapid and efficient methods of data acquisition and analysis is growing accordingly. This manual presents some of the most important techniques for data acquisition developed over the last years. The choice and justification of data analysis techniques is also an important and critical aspect of modern phylogenetic and evolutionary analysis and so a considerable part of this volume addresses this important subject. The book is mainly written for students and researchers from evolutionary biology in search for methods to acquire data, but also from molecular biology who might be looking for information on how data are analyzed in an evolutionary context. To aid the user, information on web-located sites is included wherever possible. Approaches that will push the amount of information which systematics will gather in the |
| evolution and molecular biology: Encyclopedia of Evolutionary Biology , 2016-04-14 Encyclopedia of Evolutionary Biology, Four Volume Set is the definitive go-to reference in the field of evolutionary biology. It provides a fully comprehensive review of the field in an easy to search structure. Under the collective leadership of fifteen distinguished section editors, it is comprised of articles written by leading experts in the field, providing a full review of the current status of each topic. The articles are up-to-date and fully illustrated with in-text references that allow readers to easily access primary literature. While all entries are authoritative and valuable to those with advanced understanding of evolutionary biology, they are also intended to be accessible to both advanced undergraduate and graduate students. Broad topics include the history of evolutionary biology, population genetics, quantitative genetics; speciation, life history evolution, evolution of sex and mating systems, evolutionary biogeography, evolutionary developmental biology, molecular and genome evolution, coevolution, phylogenetic methods, microbial evolution, diversification of plants and fungi, diversification of animals, and applied evolution. Presents fully comprehensive content, allowing easy access to fundamental information and links to primary research Contains concise articles by leading experts in the field that ensures current coverage of each topic Provides ancillary learning tools like tables, illustrations, and multimedia features to assist with the comprehension process |
| evolution and molecular biology: The Molecular Evolutionary Clock Simon Y. W. Ho, 2021-01-18 This book presents coverage of the principles and practice of molecular clocks, which have provided fascinating and unprecedented insights into the evolutionary timescale of life on earth. It begins by following the early development of the molecular evolutionary clock in the 1960s, and leads to the complex statistical approaches that are now used to analyse genome sequences. The chapters of this book have been contributed by leading experts in the field and address the important issues of evolutionary rates, molecular dating, and phylogenomic analysis. This is the first time that these different aspects of the molecular clock have been brought together in a single, comprehensive volume. It is an invaluable reference for students and researchers interested in evolutionary biology, genetic analysis, and genomic evolution. |
| evolution and molecular biology: Directed Evolution Library Creation Frances H. Arnold, George Georgiou, 2010-11-10 Biological systems are very special substrates for engineering—uniquely the products of evolution, they are easily redesigned by similar approaches. A simple algorithm of iterative cycles of diversification and selection, evolution works at all scales, from single molecules to whole ecosystems. In the little more than a decade since the first reported applications of evolutionary design to enzyme engineering, directed evolution has matured to the point where it now represents the centerpiece of industrial biocatalyst development and is being practiced by thousands of academic and industrial scientists in com- nies and universities around the world. The appeal of directed evolution is easy to understand: it is conceptually straightforward, it can be practiced without any special instrumentation and, most important, it frequently yields useful solutions, many of which are totally unanticipated. Directed evolution has r- dered protein engineering readily accessible to a broad audience of scientists and engineers who wish to tailor a myriad of protein properties, including th- mal and solvent stability, enzyme selectivity, specific activity, protease s- ceptibility, allosteric control of protein function, ligand binding, transcriptional activation, and solubility. Furthermore, the range of applications has expanded to the engineering of more complex functions such as those performed by m- tiple proteins acting in concert (in biosynthetic pathways) or as part of mac- molecular complexes and biological networks. |
| evolution and molecular biology: Molecular Ecology and Evolution: Approaches and Applications B. Schierwater, B. Streit, G.P. Wagner, R. DeSalle, 2013-06-29 The past 25 years have witnessed a revolution in the way ecologists and evolutionary biologists approach their disciplines. Modern molecular techniques are now reshaping the spectrum of questions that can be addressed while studying the mechanisms and consequences of the ecology and evolution of living organisms. Molecular Ecology and Evolution: Approaches and Applications describes, from a molecular perspective, several methodological and technical approaches used in the fields of ecology, evolution, population biology, molecular systematics, conservation genetics, and development. Modern techniques are introduced, and older, more classic ones refined. The advantages, limitations, and potentials of each are discussed in detail, and thereby illustrate the widening range of cross-field research and applications which this modern technology is stimulating. This book will serve as an important textbook for graduate and advanced undergraduate students, and as a key reference work for researchers |
| evolution and molecular biology: Statistical Methods in Molecular Evolution Rasmus Nielsen, 2006-05-06 In the field of molecular evolution, inferences about past evolutionary events are made using molecular data from currently living species. With the availability of genomic data from multiple related species, molecular evolution has become one of the most active and fastest growing fields of study in genomics and bioinformatics. Most studies in molecular evolution rely heavily on statistical procedures based on stochastic process modelling and advanced computational methods including high-dimensional numerical optimization and Markov Chain Monte Carlo. This book provides an overview of the statistical theory and methods used in studies of molecular evolution. It includes an introductory section suitable for readers that are new to the field, a section discussing practical methods for data analysis, and more specialized sections discussing specific models and addressing statistical issues relating to estimation and model choice. The chapters are written by the leaders of field and they will take the reader from basic introductory material to the state-of-the-art statistical methods. This book is suitable for statisticians seeking to learn more about applications in molecular evolution and molecular evolutionary biologists with an interest in learning more about the theory behind the statistical methods applied in the field. The chapters of the book assume no advanced mathematical skills beyond basic calculus, although familiarity with basic probability theory will help the reader. Most relevant statistical concepts are introduced in the book in the context of their application in molecular evolution, and the book should be accessible for most biology graduate students with an interest in quantitative methods and theory. Rasmus Nielsen received his Ph.D. form the University of California at Berkeley in 1998 and after a postdoc at Harvard University, he assumed a faculty position in Statistical Genomics at Cornell University. He is currently an Ole Rømer Fellow at the University of Copenhagen and holds a Sloan Research Fellowship. His is an associate editor of the Journal of Molecular Evolution and has published more than fifty original papers in peer-reviewed journals on the topic of this book. From the reviews: ...Overall this is a very useful book in an area of increasing importance. Journal of the Royal Statistical Society I find Statistical Methods in Molecular Evolution very interesting and useful. It delves into problems that were considered very difficult just several years ago...the book is likely to stimulate the interest of statisticians that are unaware of this exciting field of applications. It is my hope that it will also help the 'wet lab' molecular evolutionist to better understand mathematical and statistical methods. Marek Kimmel for the Journal of the American Statistical Association, September 2006 Who should read this book? We suggest that anyone who deals with molecular data (who does not?) and anyone who asks evolutionary questions (who should not?) ought to consult the relevant chapters in this book. Dan Graur and Dror Berel for Biometrics, September 2006 Coalescence theory facilitates the merger of population genetics theory with phylogenetic approaches, but still, there are mostly two camps: phylogeneticists and population geneticists. Only a few people are moving freely between them. Rasmus Nielsen is certainly one of these researchers, and his work so far has merged many population genetic and phylogenetic aspects of biological research under the umbrella of molecular evolution. Although Nielsen did not contribute a chapter to his book, his work permeates all its chapters. This book gives an overview of his interests and current achievements in molecular evolution. In short, this book should be on your bookshelf. Peter Beerli for Evolution, 60(2), 2006 |
| evolution and molecular biology: A History of Molecular Biology Michel Morange, 2000 Every day it seems the media focus on yet another new development in biology--gene therapy, the human genome project, the creation of new varieties of animals and plants through genetic engineering. These possibilities have all emanated from molecular biology. A History of Molecular Biology is a complete but compact account for a general readership of the history of this revolution. Michel Morange, himself a molecular biologist, takes us from the turn-of-the-century convergence of molecular biology's two progenitors, genetics and biochemistry, to the perfection of gene splicing and cloning techniques in the 1980s. Drawing on the important work of American, English, and French historians of science, Morange describes the major discoveries--the double helix, messenger RNA, oncogenes, DNA polymerase--but also explains how and why these breakthroughs took place. The book is enlivened by mini-biographies of the founders of molecular biology: Delbrück, Watson and Crick, Monod and Jacob, Nirenberg. This ambitious history covers the story of the transformation of biology over the last one hundred years; the transformation of disciplines: biochemistry, genetics, embryology, and evolutionary biology; and, finally, the emergence of the biotechnology industry. An important contribution to the history of science, A History of Molecular Biology will also be valued by general readers for its clear explanations of the theory and practice of molecular biology today. Molecular biologists themselves will find Morange's historical perspective critical to an understanding of what is at stake in current biological research. |
| evolution and molecular biology: Arboviruses Nikos Vasilakis, Duane J. Gubler, 2016 Arthropod-borne viruses (arboviruses) are the causative agents of significant morbidity and mortality among humans and domestic animals globally. They are maintained in complex biological life cycles, involving a primary vertebrate host and a primary arthropod vector. While all known arboviruses are zoonotic pathogens, their emergence as human pathogens is associated with dramatic increases of human population growth leading to uncontrolled urbanization, changes in land and water use, changes in agricultural practices, new irrigation systems and deforestation. This book brings together a panel of expert arbovirologists to produce a timely review of the rapidly expanding arbovirus research literature. In addition authors identify the most pressing questions that remain to be answered, thus providing a stimulus for future research. Topics include: taxonomy, genome organization, virus-host and virus-vector interactions, evolutionary history, role of vertical transmission in arbovirus maintenance and evolution, epidemiology, arbovirus replication, pathogenesis, arbovirus diagnostics and control, including vaccines, novel anti-viral drugs, RNA interference and genetically modified vectors. Essential reading for every arbovirologist and highly recommended for all virologists and public health officials. [Subject: Microbiology, Life Science, Arbovirology, Virology, Taxonomy, Epidemiology] |
| evolution and molecular biology: An Introduction to Molecular Evolution and Phylogenetics Lindell Bromham, 2016-10-14 DNA can be extracted and sequenced from a diverse range of biological samples, providing a vast amount of information about evolution and ecology. The analysis of DNA sequences contributes to evolutionary biology at all levels, from dating the origin of the biological kingdoms to untangling family relationships. An Introduction to Molecular Evolution and Phylogenetics presents the fundamental concepts and intellectual tools you need to understand how the genome records information about evolutionary past and processes, how that information can be read, and what kinds of questions we can use that information to answer. Starting with evolutionary principles, and illustrated throughout with biological examples, it is the perfect starting point on the journey to an understanding of the way molecular data is used in modern biology. Online Resource Centre The Online Resource Centre features: For registered adopters of the book: - Class plans for one-hour hands-on sessions associated with each chapter - Figures from the textbook to view and download |
| evolution and molecular biology: Molecular Systematics and Plant Evolution Peter M. Hollingsworth, Richard M. Bateman, Richard J. Gornall, 1999-08-19 Molecular Systematics and Plant Evolution discusses the diversity and evolution of plants with a molecular approach. It looks at population genetics, phylogeny (history of evolution) and developmental genetics, to provide a framework from which to understand evolutionary patterns and relationships amongst plants. The international panel of contributors are all respected systematists and evolutionary biologists, who have brought together a wide range of topics from the forefront of research while keeping the text accessible to students. It has been written for senior undergraduates, postgraduates and researchers in the fields of botany, systematics, population / conservation genetics, phylogenetics and evolutionary biology. |
| evolution and molecular biology: My Thoughts on Biological Evolution Motoo Kimura, 2020-07-29 This book, written by Motoo Kimura (1924–94), is a classic in evolutionary biology. In 1968, Kimura proposed the “neutral theory of molecular evolution”, which became the theoretical basis of modern evolutionary studies. After publishing his work in 1983 in the book “Neutral Theory of Molecular Evolution”, Kimura wrote this book in 1988 for the general public. It was originally written in Japanese and is translated here for the first time. In the book, Kimura first summarizes the development of evolutionary theory since Lamarck and Darwin. He then shows how the search for mechanisms of evolution developed into population genetics and describes how the study of molecular evolution matured by taking in the fruits of molecular biology. Kimura proceeds to carefully explain his neutral evolution theory at the molecular level. Finally, he presents his view of the world from an evolutionary perspective. The book has long served as an in-depth introduction to evolutionary biology for students and young researchers in Japan. There has been remarkably rapid progress in the field of bioscience at the molecular level over the past 30 years. Nevertheless, the book remains an important contribution that laid the foundations for what followed in molecular evolutionary studies. |
| evolution and molecular biology: Concepts of Biology Samantha Fowler, Rebecca Roush, James Wise, 2023-05-12 Black & white print. Concepts of Biology is designed for the typical introductory biology course for nonmajors, covering standard scope and sequence requirements. The text includes interesting applications and conveys the major themes of biology, with content that is meaningful and easy to understand. The book is designed to demonstrate biology concepts and to promote scientific literacy. |
| evolution and molecular biology: Molecular Evolution and Protobiology Koichiro Matsuno, 2012-12-06 In recent years, an ever-increasing amount of research has been conducted on the physico-chemical basis of the origin and evolution of life, or protobiology. Many questions are raised in this endeavor: What research methodology should be employed? What sort of dependable facts are available as a firm frame of reference upon which the physico-chemical origin of life or protolife could be examined? Is the origin due exclusively to chance events? If not, what is then responsible for the origin? What physical reality underlies the evolutionarily selective process leading to the origin? What role does variation assume and how is it generated in the course of evolution? Many research workers have pursued various avenues toward answering the stated questions. Among them, we believe Sidney W. Fox has been playing a very unique and pivotal role over the past quarter of a century, presiding over 240 man-years or more of labo ratory work. His laboratory syntheses of thermal proteins called proteinoids and proteinoid micro spheres have emphasized the prin ciple of the self-sequencing of amino acids as a key concept of protobiological synthesis. The significance of his contribution is seen in presenting the experimental evidence that the origin of life is largely due to nonrandom events. This discovery marks a new epoch in the conceptual development of studying the origin of life by focusing on the molecular processes that underlied the emergence and evolution of protobiological information. |
| evolution and molecular biology: Human Evolution Beyond Biology and Culture Jeroen C. J. M. van den Bergh, 2018-10-18 A complete account of evolutionary thought in the social, environmental and policy sciences, creating bridges with biology. |
| evolution and molecular biology: Mutation-Driven Evolution Masatoshi Nei, 2013-05-02 The purpose of this book is to present a new theory of mutation-driven evolution, which is based on recent advances in genomics and evolutionary developmental biology. This theory asserts that the driving force of evolution is mutation and natural selection is of secondary importance. |
| evolution and molecular biology: Patterns in Evolution Roger Lewin, 1999 This work shows how the tools of molecular biology are transforming the way in which evolution is viewed. Genetic analysis, especially from the DNA of prehistoric creatures, has enabled scientists to remap the history of life, producing new findings about evolutionary lineages and animal behaviour. |
Evolution - Wikipedia
Evolution is the change in the heritable characteristics of biological populations over successive generations. [1][2] It occurs when evolutionary processes such as natural selection and …
Evolution | Definition, History, Types, & Examples | Britannica
Jun 6, 2025 · evolution, theory in biology postulating that the various types of plants, animals, and other living things on Earth have their origin in other preexisting types and that the …
An introduction to evolution
Evolution helps us to understand the living world around us, as well as its history. Biological evolution is not simply a matter of change over time.
Theory of Evolution - Education
Oct 19, 2023 · The theory of evolution is a shortened form of the term “theory of evolution by natural selection,” which was proposed by Charles Darwin and Alfred Russel Wallace in the …
Evolution – Definition, Types, Advantages, Examples
Nov 13, 2024 · Evolution is the process by which species change over time through the gradual accumulation of genetic variations, driven by mechanisms like natural selection, genetic drift, …
Evolution - Simple English Wikipedia, the free encyclopedia
Evolution is a biological process. It is how living things change over time and how new species develop. The theory of evolution explains how evolution works, and how living and extinct …
evolution | Learn Science at Scitable - Nature
Evolution is a process that results in changes in the genetic material of a population over time. Evolution reflects the adaptations of organisms to their changing...
Evolution - National Human Genome Research Institute
4 days ago · Evolution, as related to genomics, refers to the process by which living organisms change over time through changes in the genome. Such evolutionary changes result from …
Evolution - Stanford Encyclopedia of Philosophy
Aug 25, 2017 · Evolution may be defined as any net directional change or any cumulative change in the characteristics of organisms or populations over many generations—in other words, …
How Evolution Works - HowStuffWorks
Evolution is a set of principles that tries to explain how life, in all its various forms, appeared on Earth. The theory of evolution succeeds in explaining why we see bacteria and mosquitoes …
Evolution - Wikipedia
Evolution is the change in the heritable characteristics of biological populations over successive generations. [1][2] It occurs when evolutionary processes such as natural selection and …
Evolution | Definition, History, Types, & Examples | Britannica
Jun 6, 2025 · evolution, theory in biology postulating that the various types of plants, animals, and other living things on Earth have their origin in other preexisting types and that the …
An introduction to evolution
Evolution helps us to understand the living world around us, as well as its history. Biological evolution is not simply a matter of change over time.
Theory of Evolution - Education
Oct 19, 2023 · The theory of evolution is a shortened form of the term “theory of evolution by natural selection,” which was proposed by Charles Darwin and Alfred Russel Wallace in the …
Evolution – Definition, Types, Advantages, Examples
Nov 13, 2024 · Evolution is the process by which species change over time through the gradual accumulation of genetic variations, driven by mechanisms like natural selection, genetic drift, …
Evolution - Simple English Wikipedia, the free encyclopedia
Evolution is a biological process. It is how living things change over time and how new species develop. The theory of evolution explains how evolution works, and how living and extinct …
evolution | Learn Science at Scitable - Nature
Evolution is a process that results in changes in the genetic material of a population over time. Evolution reflects the adaptations of organisms to their changing...
Evolution - National Human Genome Research Institute
4 days ago · Evolution, as related to genomics, refers to the process by which living organisms change over time through changes in the genome. Such evolutionary changes result from …
Evolution - Stanford Encyclopedia of Philosophy
Aug 25, 2017 · Evolution may be defined as any net directional change or any cumulative change in the characteristics of organisms or populations over many generations—in other words, …
How Evolution Works - HowStuffWorks
Evolution is a set of principles that tries to explain how life, in all its various forms, appeared on Earth. The theory of evolution succeeds in explaining why we see bacteria and mosquitoes …
